Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CAGACAGATAAATGAGAAAAAAAAAGATGAACAGAAGGTCTCCACTATGTACAGACCACCACAGTGATTTGGTTCTGCCCAAAGAACCAGCTGGGCACAA[AAGA/A]
AGAAGATGTGAAGCTGCACTTGTCCAGCTACACTCCTACACGGTTCATCATCATGTATCTACAAAATTTGTTGCTTGTCACTGCAATCATGAGTAGTAGC

Reverse complement sequence

GCTACTACTCATGATTGCAGTGACAAGCAACAAATTTTGTAGATACATGATGATGAACCGTGTAGGAGTGTAGCTGGACAAGTGCAGCTTCACATCTTCT[TCTT/T]
TTGTGCCCAGCTGGTTCTTTGGGCAGAACCAAATCACTGTGGTGGTCTGTACATAGTGGAGACCTTCTGTTCATCTTTTTTTTTCTCATTTATCTGTCTG

Allele Frequencies:

Populations Population SizeFrequency of AAGA(primary allele) Frequency of A(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.20% 1.40% 0.39% 0.00% NA
All Indica  492 98.80% 0.80% 0.41% 0.00% NA
All Japonica  244 99.60% 0.00% 0.41% 0.00% NA
Aus  7 0.00% 100.00% 0.00% 0.00% NA
Indica I  492 98.80% 0.80% 0.41% 0.00% NA
Indica II  215 99.50% 0.50% 0.00% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 97.90% 1.60% 0.53% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 97.20% 0.00% 2.78% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 98.30% 1.30% 0.43% 0.00% NA