Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CTTGCTCTTCTTCCACCTCTGTGTGCTTGTTGGCTCCAGCTTCAGGATGTGATCCTTGATGAACTCCAGCCTGTTCAGCAGCAGAGGAAAACTAGCTACT[AGAGA/AGAGG]
GAGTAAACCACTTTGGTTTGTTTGCCCTATGGTCTGGTGGCTTTTGCCCCTCATTTATAGGCAAGAGAGAGAGCTCTTGGGGTCACGTGATGGTGGAGCT

Reverse complement sequence

AGCTCCACCATCACGTGACCCCAAGAGCTCTCTCTCTTGCCTATAAATGAGGGGCAAAAGCCACCAGACCATAGGGCAAACAAACCAAAGTGGTTTACTC[TCTCT/CCTCT]
AGTAGCTAGTTTTCCTCTGCTGCTGAACAGGCTGGAGTTCATCAAGGATCACATCCTGAAGCTGGAGCCAACAAGCACACAGAGGTGGAAGAAGAGCAAG

Allele Frequencies:

Populations Population SizeFrequency of AGAGA(primary allele) Frequency of AGAGG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 96.10% 1.30% 2.58% 0.00% NA
All Indica  492 94.10% 2.10% 3.86% 0.00% NA
All Japonica  244 99.60% 0.00% 0.41% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 94.10% 2.10% 3.86% 0.00% NA
Indica II  215 98.60% 0.50% 0.93% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 92.10% 3.30% 4.74% 0.00% NA
Temperate Japonica  189 99.50% 0.00% 0.53% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 93.50% 2.70% 3.90% 0.00% NA