TTTGGAATACATATCTATCAATACACCACTAACATACATATCAGACTCGAAGCCAGTTTTTACACTTAATGAATGGATCTGCTCTCCAAGGTCAATTTCT[CTAGTGCAAGTGCAAG/CCGGTGTAAGTGCAAG,CCAGTGCAAGTGCAAG]
TCCTTAAAATGCATGGGTACGTGAATTGGTTAGGGCGTATACCTGCAGCCTGCATTTGACAGAATAGCTCAAAAGACTTTGCTAGATCATTGATCTGCCC
GGGCAGATCAATGATCTAGCAAAGTCTTTTGAGCTATTCTGTCAAATGCAGGCTGCAGGTATACGCCCTAACCAATTCACGTACCCATGCATTTTAAGGA[CTTGCACTTGCACTAG/CTTGCACTTACACCGG,CTTGCACTTGCACTGG]
AGAAATTGACCTTGGAGAGCAGATCCATTCATTAAGTGTAAAAACTGGCTTCGAGTCTGATATGTATGTTAGTGGTGTATTGATAGATATGTATTCCAAA
| Populations | Population Size | Frequency of CTAGTGCAAGTGCAAG(primary allele) | Frequency of CCGGTGTAAGTGCAAG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 89.10% | 3.60% | 7.49% | 0.00% | NA |
| All Indica | 492 | 88.00% | 5.70% | 6.71% | 0.00% | NA |
| All Japonica | 244 | 92.20% | 0.00% | 7.79% | 0.00% | NA |
| Aus | 7 | 71.40% | 0.00% | 28.57% | 0.00% | NA |
| Indica I | 492 | 88.00% | 5.70% | 6.71% | 0.00% | NA |
| Indica II | 215 | 87.40% | 8.70% | 4.19% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 86.80% | 4.60% | 8.95% | 0.00% | NA |
| Temperate Japonica | 189 | 92.10% | 0.00% | 7.94% | 0.00% | NA |
| Tropical Japonica | 36 | 91.70% | 0.00% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 87.00% | 3.80% | 9.52% | 0.00% | NA |