TTCCGCATCGTGCATAAAGGTTTACCAATGCATTCCAAATTGAAACATCTCCTGAATAACCAGACACATAAATCCGAGCATGAATCTGCAAGCCTTGCCT[CATTGCA/CATTGCT]
TTGATTCCAGCGCAGCCACTTATAGCACTTGCTAGTCCTATGTTATCTGGCCAAATTCCACATTTCTGCATCTCTTTAAAAGCTGCAAGAGCGTCCTTAC
GTAAGGACGCTCTTGCAGCTTTTAAAGAGATGCAGAAATGTGGAATTTGGCCAGATAACATAGGACTAGCAAGTGCTATAAGTGGCTGCGCTGGAATCAA[TGCAATG/AGCAATG]
AGGCAAGGCTTGCAGATTCATGCTCGGATTTATGTGTCTGGTTATTCAGGAGATGTTTCAATTTGGAATGCATTGGTAAACCTTTATGCACGATGCGGAA
| Populations | Population Size | Frequency of CATTGCT(primary allele) | Frequency of CATTGCA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 59.00% | 34.00% | 10.59% | 0.00% | NA |
| All Indica | 492 | 86.20% | 3.60% | 10.57% | 0.00% | NA |
| All Japonica | 244 | 10.90% | 80.30% | 9.84% | 0.00% | NA |
| Aus | 7 | 16.70% | 71.40% | 14.29% | 0.00% | NA |
| Indica I | 492 | 86.20% | 3.60% | 10.57% | 0.00% | NA |
| Indica II | 215 | 86.00% | 2.60% | 11.63% | 0.00% | NA |
| Indica III | 21 | 90.50% | 0.00% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 83.20% | 6.00% | 11.58% | 0.00% | NA |
| Temperate Japonica | 189 | 8.70% | 83.10% | 8.99% | 0.00% | NA |
| Tropical Japonica | 36 | 18.80% | 72.20% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 18.80% | 68.40% | 15.79% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 73.20% | 15.90% | 12.99% | 0.00% | NA |