TCTGTCTCTCATCATCTTTCTGACCTGATCCCTATTGGCCCACTTCTCGGTAACAGCATATGCATTTGAGAGAAGAACATATGATGCAGAATCATGAGGC[TCCAATTCCAAT/TCTAATTCCAGT,TCCAATTCCAGT]
AGATGTTTGGCTGCAAACTCTCCAACTTCTATGTTCTTGTGTACTTTACAGGCGCTGAGAAGGGTTCTCCAAACCATAGCATCAGCAGCAATTGGCATTT
AAATGCCAATTGCTGCTGATGCTATGGTTTGGAGAACCCTTCTCAGCGCCTGTAAAGTACACAAGAACATAGAAGTTGGAGAGTTTGCAGCCAAACATCT[ATTGGAATTGGA/ACTGGAATTAGA,ACTGGAATTGGA]
GCCTCATGATTCTGCATCATATGTTCTTCTCTCAAATGCATATGCTGTTACCGAGAAGTGGGCCAATAGGGATCAGGTCAGAAAGATGATGAGAGACAGA
| Populations | Population Size | Frequency of TCCAATTCCAAT(primary allele) | Frequency of TCTAATTCCAGT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 73.30% | 2.70% | 8.79% | 0.00% | NA |
| All Indica | 492 | 63.80% | 4.30% | 9.96% | 0.00% | NA |
| All Japonica | 244 | 89.80% | 0.00% | 6.97% | 0.00% | NA; TCCAATTCCAGT: 3.50% |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 63.80% | 4.30% | 9.96% | 0.00% | NA |
| Indica II | 215 | 60.90% | 5.70% | 10.23% | 0.00% | NA |
| Indica III | 21 | 0.00% | 5.30% | 9.52% | 0.00% | NA; TCTAATTCCAGT: 47.60% |
| Indica Intermediate | 190 | 59.50% | 4.70% | 9.47% | 0.00% | NA |
| Temperate Japonica | 189 | 91.00% | 0.00% | 7.94% | 0.00% | NA; TCCAATTCCAGT: 1.10% |
| Tropical Japonica | 36 | 77.80% | 0.00% | 5.56% | 0.00% | NA; TCCAATTCCAGT: 17.60% |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 65.40% | 3.80% | 8.23% | 0.00% | NA |