GGCTTGAGAATGTTTCTACGTGCTCCAGATTTCAGATGACTAATTGGGGTTTCCAATTGTTTTCCTTTCATCCCTCCTGCTCGCTCCTTTCTTTCAGTTT[TCTCAATCTGTCTG/TTTCAATCTATCTGC]
CGAAGTAAAGCAAGCATAAGACAAGGTTCAGTTCATTCAGTTGTATATGCCTATGATCACCATGGCATGCACATGAAAGAAGCTAACATAGAAGCTGTAC
GTACAGCTTCTATGTTAGCTTCTTTCATGTGCATGCCATGGTGATCATAGGCATATACAACTGAATGAACTGAACCTTGTCTTATGCTTGCTTTACTTCG[CAGACAGATTGAGA/GCAGATAGATTGAAA]
AAACTGAAAGAAAGGAGCGAGCAGGAGGGATGAAAGGAAAACAATTGGAAACCCCAATTAGTCATCTGAAATCTGGAGCACGTAGAAACATTCTCAAGCC
| Populations | Population Size | Frequency of TCTCAATCTGTCTG(primary allele) | Frequency of TTTCAATCTATCTGC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 72.10% | 20.20% | 9.69% | 0.00% | NA |
| All Indica | 492 | 64.20% | 27.50% | 11.38% | 0.00% | NA |
| All Japonica | 244 | 86.50% | 7.50% | 6.56% | 0.00% | NA |
| Aus | 7 | 71.40% | 16.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 64.20% | 27.50% | 11.38% | 0.00% | NA |
| Indica II | 215 | 60.50% | 29.70% | 13.95% | 0.00% | NA |
| Indica III | 21 | 31.60% | 61.90% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 58.90% | 33.30% | 11.58% | 0.00% | NA |
| Temperate Japonica | 189 | 87.80% | 4.60% | 7.94% | 0.00% | NA |
| Tropical Japonica | 36 | 80.60% | 17.10% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 84.20% | 15.80% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 62.80% | 30.00% | 10.39% | 0.00% | NA |