CAGCTGCTTCTCAGAATCTAAAGCTCTCCCAAACAGGCCCTTATAGCCGTTTGACTCAGTACAGTGTTAAAATCATATTCTATTTGGTTTTCTCGTCAAT[AATAAATA/AATAAATG]
AATTAACAATCCAACACCTAGAACCAAGCACTCAAGCAGTGGAGTTTGTCACCAGAGACCTAAGAATGTCCGTATGAGAGTTGACTCCCCATGCCATATC
GATATGGCATGGGGAGTCAACTCTCATACGGACATTCTTAGGTCTCTGGTGACAAACTCCACTGCTTGAGTGCTTGGTTCTAGGTGTTGGATTGTTAATT[TATTTATT/CATTTATT]
ATTGACGAGAAAACCAAATAGAATATGATTTTAACACTGTACTGAGTCAAACGGCTATAAGGGCCTGTTTGGGAGAGCTTTAGATTCTGAGAAGCAGCTG
| Populations | Population Size | Frequency of AATAAATG(primary allele) | Frequency of AATAAATA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 53.60% | 39.90% | 10.72% | 0.00% | NA |
| All Indica | 492 | 79.50% | 10.30% | 11.38% | 0.00% | NA |
| All Japonica | 244 | 7.20% | 84.00% | 9.43% | 0.00% | NA |
| Aus | 7 | 16.70% | 71.40% | 14.29% | 0.00% | NA |
| Indica I | 492 | 79.50% | 10.30% | 11.38% | 0.00% | NA |
| Indica II | 215 | 83.30% | 5.30% | 12.09% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 73.70% | 16.70% | 11.58% | 0.00% | NA |
| Temperate Japonica | 189 | 4.70% | 85.70% | 10.05% | 0.00% | NA |
| Tropical Japonica | 36 | 17.10% | 80.60% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 12.50% | 73.70% | 15.79% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 64.50% | 26.60% | 12.12% | 0.00% | NA |