GGCCCACTCCGGCTTCGCGACCACCGCCCTGTTTCTGTTGCTGTCACACTGCGCCGTCACCGCGATCGCGTTGGCCTCGTCGACCTGCGATTTCACGTTC[T/TCGT]
CGTCGTCGGTGGACGCCGGGATCAGCACGATCTTCCGGCCGAGCGGGCCGTACACCATGTACAAGGCGGCGACGATGGGGAAGCCGAGGCCGAGCGCCAT
ATGGCGCTCGGCCTCGGCTTCCCCATCGTCGCCGCCTTGTACATGGTGTACGGCCCGCTCGGCCGGAAGATCGTGCTGATCCCGGCGTCCACCGACGACG[A/ACGA]
GAACGTGAAATCGCAGGTCGACGAGGCCAACGCGATCGCGGTGACGGCGCAGTGTGACAGCAACAGAAACAGGGCGGTGGTCGCGAAGCCGGAGTGGGCC
| Populations | Population Size | Frequency of T(primary allele) | Frequency of TCGT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 94.80% | 3.50% | 1.68% | 0.00% | NA |
| All Indica | 492 | 93.50% | 5.00% | 1.63% | 0.00% | NA |
| All Japonica | 244 | 98.00% | 0.80% | 1.23% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 93.50% | 5.00% | 1.63% | 0.00% | NA |
| Indica II | 215 | 94.40% | 3.80% | 1.86% | 0.00% | NA |
| Indica III | 21 | 85.70% | 10.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 90.50% | 7.50% | 2.11% | 0.00% | NA |
| Temperate Japonica | 189 | 97.40% | 1.10% | 1.59% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 90.90% | 6.70% | 2.60% | 0.00% | NA |