TTTAGTTTGTACCGTCCTTTCAAAAAAACATTGAAAGGAAGATCGTCTTCATTATGGCCGGCAAACGTAGACATGTTGACAGACGACATGCATGCATTCC[TT/TTTTT,TTTTTT]
TTTTTTCAGGTTTAGAGTAACTGACATGTGGGCCCAGCAGGTATAGCTACTGCTCCTAATTTGTATAGGCAGCCCTAGTGTGTATACATCATAGTCGAAA
TTTCGACTATGATGTATACACACTAGGGCTGCCTATACAAATTAGGAGCAGTAGCTATACCTGCTGGGCCCACATGTCAGTTACTCTAAACCTGAAAAAA[AA/AAAAA,AAAAAA]
GGAATGCATGCATGTCGTCTGTCAACATGTCTACGTTTGCCGGCCATAATGAAGACGATCTTCCTTTCAATGTTTTTTTGAAAGGACGGTACAAACTAAA
| Populations | Population Size | Frequency of TT(primary allele) | Frequency of TTTTTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 72.00% | 0.70% | 7.62% | 0.00% | NA |
| All Indica | 492 | 94.70% | 0.40% | 2.64% | 0.00% | NA |
| All Japonica | 244 | 0.00% | 1.00% | 17.21% | 0.00% | NA; TTTTTT: 54.90% |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 94.70% | 0.40% | 2.64% | 0.00% | NA |
| Indica II | 215 | 96.30% | 0.00% | 3.26% | 0.00% | NA; TTTTT: 0.50% |
| Indica III | 21 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 93.20% | 1.10% | 2.11% | 0.00% | NA |
| Temperate Japonica | 189 | 33.30% | 0.00% | 14.29% | 0.00% | NA; TT: 57.10% |
| Tropical Japonica | 36 | 0.00% | 7.10% | 22.22% | 0.00% | NA; TTTTTT: 50.00% |
| Japonica Intermediate | 19 | 33.30% | 0.00% | 36.84% | 0.00% | NA; TT: 42.10% |
| VI/Aromatic | 9 | 22.20% | 0.00% | 0.00% | 0.00% | NA; TT: 77.80% |
| Intermediate | 231 | 85.30% | 1.40% | 6.49% | 0.00% | NA |