AGTTTCATATACTCTTTAGTTTGTACCGTCCTTTCAAAAAAACATTGAAAGGAAGATCGTCTTCATTATGGCCGGCAAACGTAGACATGTTGACAGACGA[CATGCATGCAT/CATGCATGCATGCAT]
TCCTTTTTTTTCAGGTTTAGAGTAACTGACATGTGGGCCCAGCAGGTATAGCTACTGCTCCTAATTTGTATAGGCAGCCCTAGTGTGTATACATCATAGT
ACTATGATGTATACACACTAGGGCTGCCTATACAAATTAGGAGCAGTAGCTATACCTGCTGGGCCCACATGTCAGTTACTCTAAACCTGAAAAAAAAGGA[ATGCATGCATG/ATGCATGCATGCATG]
TCGTCTGTCAACATGTCTACGTTTGCCGGCCATAATGAAGACGATCTTCCTTTCAATGTTTTTTTGAAAGGACGGTACAAACTAAAGAGTATATGAAACT
| Populations | Population Size | Frequency of CATGCATGCAT(primary allele) | Frequency of CATGCATGCATGCAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 94.10% | 0.70% | 5.30% | 0.00% | NA |
| All Indica | 492 | 97.80% | 0.40% | 1.83% | 0.00% | NA |
| All Japonica | 244 | 86.90% | 0.90% | 12.30% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 97.80% | 0.40% | 1.83% | 0.00% | NA |
| Indica II | 215 | 97.20% | 0.00% | 2.79% | 0.00% | NA |
| Indica III | 21 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 97.90% | 1.10% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Tropical Japonica | 36 | 86.10% | 6.10% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 68.40% | 0.00% | 31.58% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 94.40% | 1.40% | 4.33% | 0.00% | NA |