TTTACATGTTGTACTACTTTCTAAAAATTCAGAGTATGGTAACAAGCCAAATCAGAAAGCAGAATTCTGTCTTCAAAACAAACAACCTCAGACCTAGGAG[AATTAATTAA/AATTAATTAATT]
ACCTGAAGAAATTTCTCAAACCAAAAACATGTCATTATGAACTGTTGCACCATATATGTTTGTTTGCCAAAAACACGGGAGTGGATTCTAATCCCTCGAG
CTCGAGGGATTAGAATCCACTCCCGTGTTTTTGGCAAACAAACATATATGGTGCAACAGTTCATAATGACATGTTTTTGGTTTGAGAAATTTCTTCAGGT[TTAATTAATT/AATTAATTAATT]
CTCCTAGGTCTGAGGTTGTTTGTTTTGAAGACAGAATTCTGCTTTCTGATTTGGCTTGTTACCATACTCTGAATTTTTAGAAAGTAGTACAACATGTAAA
| Populations | Population Size | Frequency of AATTAATTAA(primary allele) | Frequency of AATTAATTAATT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 73.40% | 22.80% | 4.91% | 0.00% | NA |
| All Indica | 492 | 96.30% | 2.10% | 1.63% | 0.00% | NA |
| All Japonica | 244 | 31.50% | 61.50% | 10.25% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 96.30% | 2.10% | 1.63% | 0.00% | NA |
| Indica II | 215 | 99.50% | 0.50% | 0.00% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 93.20% | 3.30% | 3.68% | 0.00% | NA |
| Temperate Japonica | 189 | 32.90% | 60.30% | 10.05% | 0.00% | NA |
| Tropical Japonica | 36 | 28.10% | 63.90% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 23.50% | 68.40% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 25.00% | 66.70% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 85.30% | 9.60% | 5.63% | 0.00% | NA |