GATCCAAACTTTGGATCTAAACACAGCCTACAAACAAAAGTATTTGCTGAGTGTTGACCGAATTTAGTCGAAGCAGCATCAGCTTTAGCAACAATTGCCC[TTTTTT/TTTT,TTTTT]
TTATTCATAGCTCTGAAGCAAATAAATTGCATCTTCTTCCACATCCAAAATCTATACCATTCAGTTTTGTACTCCTAAACATTCGTGATGATTCTTAAGA
TCTTAAGAATCATCACGAATGTTTAGGAGTACAAAACTGAATGGTATAGATTTTGGATGTGGAAGAAGATGCAATTTATTTGCTTCAGAGCTATGAATAA[AAAAAA/AAAA,AAAAA]
GGGCAATTGTTGCTAAAGCTGATGCTGCTTCGACTAAATTCGGTCAACACTCAGCAAATACTTTTGTTTGTAGGCTGTGTTTAGATCCAAAGTTTGGATC
| Populations | Population Size | Frequency of TTTTT(primary allele) | Frequency of TTTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 55.70% | 0.90% | 16.54% | 0.00% | NA |
| All Indica | 492 | 79.70% | 0.50% | 17.68% | 0.00% | NA |
| All Japonica | 244 | 0.00% | 1.90% | 14.34% | 0.00% | NA; TTTT: 77.50% |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 79.70% | 0.50% | 17.68% | 0.00% | NA |
| Indica II | 215 | 82.80% | 0.60% | 16.28% | 0.00% | NA |
| Indica III | 21 | 66.70% | 0.00% | 33.33% | 0.00% | NA |
| Indica Intermediate | 190 | 75.30% | 0.00% | 21.05% | 0.00% | NA; TTTTTT: 4.70% |
| Temperate Japonica | 189 | 6.10% | 0.00% | 13.23% | 0.00% | NA; TTTTT: 81.50% |
| Tropical Japonica | 36 | 0.00% | 11.10% | 25.00% | 0.00% | NA; TTTT: 55.60% |
| Japonica Intermediate | 19 | 0.00% | 5.60% | 5.26% | 0.00% | NA; TTTT: 78.90% |
| VI/Aromatic | 9 | 25.00% | 0.00% | 11.11% | 0.00% | NA; TTTTT: 66.70% |
| Intermediate | 231 | 69.30% | 0.50% | 19.48% | 0.00% | NA |