ACGGGTGGCGGGAAGGCCGTCGCCGGCGACGAGGCAGAGCCGGGGACCTCCAAGGCGGCGCCGCCGAGCCGCGGCACCTCCTCCAAAAATGGGTCCGCCA[AGCAG/AGCAT]
CAGCCGTGCTCGCCGGCGGCCAAGGCGGCGGCGACGGAAGCGGCGGCGGCGGCGTCGTCGTCCAAGAAGCCGGCAGGCCCCATCGGCGAGGTGCTGGAGC
GCTCCAGCACCTCGCCGATGGGGCCTGCCGGCTTCTTGGACGACGACGCCGCCGCCGCCGCTTCCGTCGCCGCCGCCTTGGCCGCCGGCGAGCACGGCTG[CTGCT/ATGCT]
TGGCGGACCCATTTTTGGAGGAGGTGCCGCGGCTCGGCGGCGCCGCCTTGGAGGTCCCCGGCTCTGCCTCGTCGCCGGCGACGGCCTTCCCGCCACCCGT
| Populations | Population Size | Frequency of AGCAG(primary allele) | Frequency of AGCAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 85.80% | 0.20% | 14.08% | 0.00% | NA |
| All Indica | 492 | 84.60% | 0.00% | 15.45% | 0.00% | NA |
| All Japonica | 244 | 88.90% | 0.00% | 11.07% | 0.00% | NA |
| Aus | 7 | 71.40% | 16.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 84.60% | 0.00% | 15.45% | 0.00% | NA |
| Indica II | 215 | 83.70% | 0.00% | 16.28% | 0.00% | NA |
| Indica III | 21 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 82.60% | 0.00% | 17.37% | 0.00% | NA |
| Temperate Japonica | 189 | 89.40% | 0.00% | 10.58% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 0.00% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 73.70% | 0.00% | 26.32% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 81.80% | 0.00% | 18.18% | 0.00% | NA |