CATATCGATCGTCTCTCTCTCTCTCTCTCTATACATGTACTACCACTATCTATATAATATGTCATATACTTCTACTTCACTTATACAGTATATAGCTACA[GT/GC]
ACCTACCTACATACATGCTAGCTTAATTTACGCACGTATGCATATACACTCGATCGATACGATTGACTGTCCTTACCCCTGATTGCTGTCCTTAATTAAT
ATTAATTAAGGACAGCAATCAGGGGTAAGGACAGTCAATCGTATCGATCGAGTGTATATGCATACGTGCGTAAATTAAGCTAGCATGTATGTAGGTAGGT[AC/GC]
TGTAGCTATATACTGTATAAGTGAAGTAGAAGTATATGACATATTATATAGATAGTGGTAGTACATGTATAGAGAGAGAGAGAGAGAGACGATCGATATG
| Populations | Population Size | Frequency of GC(primary allele) | Frequency of GT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 60.90% | 35.40% | 5.81% | 0.00% | NA |
| All Indica | 492 | 93.30% | 2.30% | 4.47% | 0.00% | NA |
| All Japonica | 244 | 1.80% | 91.00% | 7.38% | 0.00% | NA |
| Aus | 7 | 16.70% | 71.40% | 14.29% | 0.00% | NA |
| Indica I | 492 | 93.30% | 2.30% | 4.47% | 0.00% | NA |
| Indica II | 215 | 94.40% | 1.50% | 4.19% | 0.00% | NA |
| Indica III | 21 | 90.50% | 5.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 91.10% | 3.90% | 5.26% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 92.60% | 6.35% | 0.00% | NA |
| Tropical Japonica | 36 | 3.10% | 86.10% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.90% | 84.20% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 12.50% | 77.80% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 77.90% | 16.70% | 6.49% | 0.00% | NA |