TCCCAACAAACAAGACGGGCGCGCGGGAGAAACGAAATTGTTCGAGAGGACTACTACCACATTCGACGACGAGGAGGACGACGGCGAGCGAGCCCGGCAG[GGGAGGGAGCGCGT/GGGGGGGAGCGCGT]
GTGGGGCAGGTCGCTCCTCAGCCGGTGGTGGTGGAGGAGGGGTCCTCCCCCGCCGCCGCCGGCAGCGCGCCGCGGCCATGGGGCCAGCGCGGCGGCGGCG
CGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCAC[ACGCGCTCCCTCCC/ACGCGCTCCCCCCC]
CTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGGTAGTAGTCCTCTCGAACAATTTCGTTTCTCCCGCGCGCCCGTCTTGTTTGTTGGGA
| Populations | Population Size | Frequency of GGGGGGGAGCGCGT(primary allele) | Frequency of GGGAGGGAGCGCGT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 53.60% | 37.20% | 14.60% | 0.00% | NA |
| All Indica | 492 | 80.30% | 7.30% | 13.41% | 0.00% | NA |
| All Japonica | 244 | 0.50% | 83.20% | 16.39% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 80.30% | 7.30% | 13.41% | 0.00% | NA |
| Indica II | 215 | 85.10% | 5.20% | 10.23% | 0.00% | NA |
| Indica III | 21 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 76.80% | 8.20% | 16.32% | 0.00% | NA |
| Temperate Japonica | 189 | 0.60% | 81.50% | 17.99% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 83.30% | 16.67% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 55.60% | 44.40% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 66.20% | 20.70% | 16.45% | 0.00% | NA |