GCCTGACGGGGTCGCCCAGCTGCGCCTTCACCCTCAGCAGCGCGGCGCGGTCGTCGCCGTTGCACTCCACCGCCGACGAGACGGCGGTGCAGGCGGACAG[GACGACGACGAC/GACGACGACGAT]
GAGGCAGAGCAGTGGAATCCACGACGAGGCTACTACTGTTGCATTGGCCATTTTCTTGGGTTTTTAGGGTTTTTTTTGGCAGCAATGCAAGCTACTGTGA
TCACAGTAGCTTGCATTGCTGCCAAAAAAAACCCTAAAAACCCAAGAAAATGGCCAATGCAACAGTAGTAGCCTCGTCGTGGATTCCACTGCTCTGCCTC[GTCGTCGTCGTC/ATCGTCGTCGTC]
CTGTCCGCCTGCACCGCCGTCTCGTCGGCGGTGGAGTGCAACGGCGACGACCGCGCCGCGCTGCTGAGGGTGAAGGCGCAGCTGGGCGACCCCGTCAGGC
| Populations | Population Size | Frequency of GACGACGACGAC(primary allele) | Frequency of GACGACGACGAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 92.80% | 1.50% | 5.81% | 0.00% | NA |
| All Indica | 492 | 92.70% | 1.50% | 5.89% | 0.00% | NA |
| All Japonica | 244 | 95.10% | 0.00% | 4.92% | 0.00% | NA |
| Aus | 7 | 33.30% | 57.10% | 14.29% | 0.00% | NA |
| Indica I | 492 | 92.70% | 1.50% | 5.89% | 0.00% | NA |
| Indica II | 215 | 97.70% | 0.00% | 2.33% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 89.50% | 1.70% | 8.95% | 0.00% | NA |
| Temperate Japonica | 189 | 96.30% | 0.00% | 3.70% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 0.00% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 84.20% | 0.00% | 15.79% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 88.70% | 1.40% | 9.96% | 0.00% | NA |