CCTCGGCGCCAGCGCTGCGGCGGGCGCAGAGGACGCCGAGGCCGCCATCGGAGCCGACGCGGGCGCCGTTGAGAGAAGGGAGCAGGAAGACGACGGCGGC[GAGG/GAGT]
AGGAGCAGCGCGAGCGGGGCGAGGAGGAGGTAGGAGTTGGACGACGCCGGCGCCTTCATCGCCATGGCCGCATGCAAATGCAACGGGAGACAACGTGGTT
AACCACGTTGTCTCCCGTTGCATTTGCATGCGGCCATGGCGATGAAGGCGCCGGCGTCGTCCAACTCCTACCTCCTCCTCGCCCCGCTCGCGCTGCTCCT[CCTC/ACTC]
GCCGCCGTCGTCTTCCTGCTCCCTTCTCTCAACGGCGCCCGCGTCGGCTCCGATGGCGGCCTCGGCGTCCTCTGCGCCCGCCGCAGCGCTGGCGCCGAGG
| Populations | Population Size | Frequency of GAGG(primary allele) | Frequency of GAGT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 52.60% | 36.40% | 17.31% | 0.00% | NA |
| All Indica | 492 | 43.30% | 45.50% | 19.72% | 0.00% | NA |
| All Japonica | 244 | 85.70% | 1.40% | 13.11% | 0.00% | NA |
| Aus | 7 | 42.90% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 43.30% | 45.50% | 19.72% | 0.00% | NA |
| Indica II | 215 | 45.60% | 41.70% | 21.86% | 0.00% | NA |
| Indica III | 21 | 23.50% | 61.90% | 19.05% | 0.00% | NA |
| Indica Intermediate | 190 | 38.60% | 49.50% | 19.47% | 0.00% | NA |
| Temperate Japonica | 189 | 87.30% | 1.20% | 11.64% | 0.00% | NA |
| Tropical Japonica | 36 | 80.60% | 0.00% | 19.44% | 0.00% | NA |
| Japonica Intermediate | 19 | 78.90% | 6.20% | 15.79% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 47.60% | 42.40% | 19.05% | 0.00% | NA |