RiceVarMap2

Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

TTCCGGCGGATGTGCGTGTTCCAGTAGTTCTTGATCTCGTTGTCCGTCCTCCCCGGCAGCCTCGCCGCGATCAGAGACCACCTGACAGATGATGAAAATC[GATGGATGGA/GATGGATGGATGGATGGATGG]
AGAGAGGCGAGGTGAGGCAGAAGGCAAGAAAAGAGAAGCGTAGTTACTTGTTGCCGAGGAGGCTGTGGAGCTTGATGATGAGGTCGTCCTCGTCGGCGGT

Reverse complement sequence

ACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTAACTACGCTTCTCTTTTCTTGCCTTCTGCCTCACCTCGCCTCTCT[TCCATCCATC/CCATCCATCCATCCATCCATC]
GATTTTCATCATCTGTCAGGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAA

Allele Frequencies:

Search:

Populations	Population Size	Frequency of GATGGATGGATGGATGGATG G(primary allele)	Frequency of GATGGATGGA(secondary allele)	Frequency of N	Frequency of DEL	Frequency of others Allele
All	774	84.20%	13.10%	3.10%	0.00%	NA
All Indica	492	97.20%	0.00%	2.85%	0.00%	NA
All Japonica	244	57.00%	40.90%	3.69%	0.00%	NA
Aus	7	85.70%	0.00%	14.29%	0.00%	NA
Indica I	492	97.20%	0.00%	2.85%	0.00%	NA
Indica II	215	97.70%	0.00%	2.33%	0.00%	NA
Indica III	21	95.20%	0.00%	4.76%	0.00%	NA
Indica Intermediate	190	96.80%	0.00%	3.16%	0.00%	NA
Temperate Japonica	189	47.20%	50.30%	4.76%	0.00%	NA
Tropical Japonica	36	97.20%	2.80%	0.00%	0.00%	NA
Japonica Intermediate	19	100.00%	0.00%	0.00%	0.00%	NA
VI/Aromatic	9	100.00%	0.00%	0.00%	0.00%	NA
Intermediate	231	96.50%	0.90%	2.60%	0.00%	NA

Showing 1 to 13 of 13 entries

Contact

Address: Room B111, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural university, Wuhan, 430070, China

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Search for Variation information by Variation ID:

Flanking Sequence (100 bp) in Reference Genome:

Reverse complement sequence

Allele Frequencies:

RiceVarMap v2.0

Tools

Blast

Design Primer by Variation ID

Design Primer by Region

Haplotype Network Analysis

Varitation Coordinate Convert

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