TATCAAGTAAATCACTAGCAAAAAAGGTTAAAAGTATAAAGAAGAGAAAGGCAGGAAAGAGAAAACATTCTTCTTTTCCTTAACCACTTCCTCTTTCTCT[CACACAC/CAC,CACAC]
ACACACACTAGGCACAAATTCTCATCTTGTTCTATATGTACCCAAGCCCAAAACTATAGCCCAAGTGAGTTAATACTTAAGCAGCAACTAATTAACCATA
TATGGTTAATTAGTTGCTGCTTAAGTATTAACTCACTTGGGCTATAGTTTTGGGCTTGGGTACATATAGAACAAGATGAGAATTTGTGCCTAGTGTGTGT[GTGTGTG/GTG,GTGTG]
AGAGAAAGAGGAAGTGGTTAAGGAAAAGAAGAATGTTTTCTCTTTCCTGCCTTTCTCTTCTTTATACTTTTAACCTTTTTTGCTAGTGATTTACTTGATA
| Populations | Population Size | Frequency of CACACAC(primary allele) | Frequency of CAC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 73.90% | 2.70% | 4.78% | 0.00% | NA |
| All Indica | 492 | 62.80% | 4.10% | 6.10% | 0.00% | NA |
| All Japonica | 244 | 97.50% | 0.00% | 1.64% | 0.00% | NA; CACAC: 0.80% |
| Aus | 7 | 0.00% | 0.00% | 0.00% | 0.00% | NA; CACAC: 0.00%; CACAC: 100.00% |
| Indica I | 492 | 62.80% | 4.10% | 6.10% | 0.00% | NA |
| Indica II | 215 | 71.20% | 9.20% | 3.72% | 0.00% | NA |
| Indica III | 21 | 47.60% | 19.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 62.10% | 0.00% | 7.89% | 0.00% | NA; CACAC: 32.60% |
| Temperate Japonica | 189 | 97.40% | 0.00% | 1.59% | 0.00% | NA; CACAC: 1.10% |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 65.80% | 0.50% | 8.23% | 0.00% | NA |