ATACCGACCTCCCTGCCCCTTCCTCTAGCCTCGCTGAACTTATCGGCAATTTCTCCAGAAAGGGACTCGACGTAACCGACATGGTTGCTCTCTCAGGTAC[ATATATAT/ATATAT]
GTACACAGATTATATCAGTGATTGATTCTCTTACAAATTTTCTGATAAGAATCATAATACGATGAGAACTTGCAGGCGCACACACGATCGGGCAGGCGCA
TGCGCCTGCCCGATCGTGTGTGCGCCTGCAAGTTCTCATCGTATTATGATTCTTATCAGAAAATTTGTAAGAGAATCAATCACTGATATAATCTGTGTAC[ATATATAT/ATATAT]
GTACCTGAGAGAGCAACCATGTCGGTTACGTCGAGTCCCTTTCTGGAGAAATTGCCGATAAGTTCAGCGAGGCTAGAGGAAGGGGCAGGGAGGTCGGTAT
| Populations | Population Size | Frequency of ATATAT(primary allele) | Frequency of ATATATAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 61.80% | 36.10% | 3.36% | 0.00% | NA |
| All Indica | 492 | 92.90% | 5.00% | 2.24% | 0.00% | NA |
| All Japonica | 244 | 3.40% | 91.80% | 4.92% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 92.90% | 5.00% | 2.24% | 0.00% | NA |
| Indica II | 215 | 93.50% | 4.70% | 1.86% | 0.00% | NA |
| Indica III | 21 | 90.50% | 9.50% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 90.00% | 7.60% | 2.63% | 0.00% | NA |
| Temperate Japonica | 189 | 3.40% | 91.50% | 5.29% | 0.00% | NA |
| Tropical Japonica | 36 | 2.90% | 91.70% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.30% | 94.70% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 11.10% | 88.90% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 77.10% | 20.20% | 3.46% | 0.00% | NA |