GTTATATACTATATGTTTCTTTTCTCAGAGGCCATTGAGGCAGGTTGGCTTGACTGCCTTCGAGTAGTAGGTCGTCTCTACGTCCGCGCGTTGCCGCCAA[GAGGAGGAG/GAGGAG]
CTCGAGGTTCTGTGGTTGGACAAGCGTCAAGAGGTGACGTGCGGTGCGGAGGGCCTACCATGTATCGTCCAGTTCTAGTGGTTCTTCAGTAGTTTCCTAG
CTAGGAAACTACTGAAGAACCACTAGAACTGGACGATACATGGTAGGCCCTCCGCACCGCACGTCACCTCTTGACGCTTGTCCAACCACAGAACCTCGAG[CTCCTCCTC/CTCCTC]
TTGGCGGCAACGCGCGGACGTAGAGACGACCTACTACTCGAAGGCAGTCAAGCCAACCTGCCTCAATGGCCTCTGAGAAAAGAAACATATAGTATATAAC
| Populations | Population Size | Frequency of GAGGAG(primary allele) | Frequency of GAGGAGGAG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 57.00% | 39.80% | 5.43% | 0.00% | NA |
| All Indica | 492 | 86.60% | 9.20% | 4.67% | 0.00% | NA |
| All Japonica | 244 | 0.90% | 93.40% | 5.74% | 0.00% | NA |
| Aus | 7 | 42.90% | 57.10% | 0.00% | 0.00% | NA |
| Indica I | 492 | 86.60% | 9.20% | 4.67% | 0.00% | NA |
| Indica II | 215 | 87.00% | 8.30% | 5.12% | 0.00% | NA |
| Indica III | 21 | 95.20% | 0.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 85.80% | 10.40% | 4.21% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 93.70% | 5.29% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 88.90% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 55.60% | 37.50% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 72.70% | 23.30% | 5.19% | 0.00% | NA |