Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TCATTTCAGAAAATACAGTAGAAAGCAACGAAGGAATAGAGAAATCACCGAAGCTACCAATCTCACCTGCACGACCTCGACGATGGTGCGGGTGACCAGC[GCGGCGGCG/GCGGCGGCA]
CGCTCGGTGTAGTGGCCCCGGGCGACGATCCGGTCGAAGAGCTCCCCGCCCTCGCAGAGCTCCATGACGAGGTGGACGGCATTGTCGTCCTCGTAGGTGT

Reverse complement sequence

ACACCTACGAGGACGACAATGCCGTCCACCTCGTCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCGGATCGTCGCCCGGGGCCACTACACCGAGCG[CGCCGCCGC/TGCCGCCGC]
GCTGGTCACCCGCACCATCGTCGAGGTCGTGCAGGTGAGATTGGTAGCTTCGGTGATTTCTCTATTCCTTCGTTGCTTTCTACTGTATTTTCTGAAATGA

Allele Frequencies:

Populations Population SizeFrequency of GCGGCGGCG(primary allele) Frequency of GCGGCGGCA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 88.00% 9.70% 2.58% 0.00% NA
All Indica  492 98.20% 0.80% 1.02% 0.00% NA
All Japonica  244 66.00% 29.70% 6.15% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 98.20% 0.80% 1.02% 0.00% NA
Indica II  215 97.70% 1.40% 0.93% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 97.90% 0.50% 1.58% 0.00% NA
Temperate Japonica  189 60.30% 35.20% 6.88% 0.00% NA
Tropical Japonica  36 94.40% 2.90% 2.78% 0.00% NA
Japonica Intermediate  19 68.40% 27.80% 5.26% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 95.20% 3.10% 1.73% 0.00% NA