AAAGTACAGAACAATGCTATTAATACTTTCAGAGTCATGTGTGCTATGAATCATTATGTCAAAACATTTTGTGCACACCACCAAATTAATTAAACTATTT[GAAGAAGAA/GAAGAAGAAGAA]
AAAACTAGCAGTCTATCAATTTCTTAAAACTAGTCAATGAAGAGCCACAAACCTTATCAGTGTCTACATCACGGATGATGGCATTGATAACCTCTTCATG
CATGAAGAGGTTATCAATGCCATCATCCGTGATGTAGACACTGATAAGGTTTGTGGCTCTTCATTGACTAGTTTTAAGAAATTGATAGACTGCTAGTTTT[TTCTTCTTC/TTCTTCTTCTTC]
AAATAGTTTAATTAATTTGGTGGTGTGCACAAAATGTTTTGACATAATGATTCATAGCACACATGACTCTGAAAGTATTAATAGCATTGTTCTGTACTTT
| Populations | Population Size | Frequency of GAAGAAGAAGAA(primary allele) | Frequency of GAAGAAGAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 76.40% | 20.20% | 4.26% | 0.00% | NA |
| All Indica | 492 | 93.90% | 3.70% | 2.44% | 0.00% | NA |
| All Japonica | 244 | 46.50% | 49.60% | 7.38% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 93.90% | 3.70% | 2.44% | 0.00% | NA |
| Indica II | 215 | 93.50% | 2.90% | 3.72% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 94.20% | 4.80% | 1.05% | 0.00% | NA |
| Temperate Japonica | 189 | 47.10% | 49.40% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 24.20% | 69.40% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 47.10% | 47.40% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 0.00% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 84.80% | 12.90% | 2.60% | 0.00% | NA |