TCGGGAGGGGGTGGTCGCCGAATTGGGGGAGGCGCTAAACCCCCCAGAAAAATCGGAAGCGAGGCGAGGAGGATTCGAGGAGTCGGGTGAAGTGGGGTTT[AGGGAAGGGAAG/AGGGAAGGGAAGGGAAGG]
CGAGGGGGAGTGTGTGAAGGGGGAGAGAAGGTTTTGATGGCGCTGCATCCAATAATACGCCTTCTTGTTAACGTTAGCGGAAATGCAGAATCTCTTTCGA
TCGAAAGAGATTCTGCATTTCCGCTAACGTTAACAAGAAGGCGTATTATTGGATGCAGCGCCATCAAAACCTTCTCTCCCCCTTCACACACTCCCCCTCG[CTTCCCTTCCCT/CCTTCCCTTCCCTTCCCT]
AAACCCCACTTCACCCGACTCCTCGAATCCTCCTCGCCTCGCTTCCGATTTTTCTGGGGGGTTTAGCGCCTCCCCCAATTCGGCGACCACCCCCTCCCGA
| Populations | Population Size | Frequency of AGGGAAGGGAAG(primary allele) | Frequency of AGGGAAGGGAAGGGAAGG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 96.50% | 1.60% | 1.94% | 0.00% | NA |
| All Indica | 492 | 95.70% | 2.50% | 1.83% | 0.00% | NA |
| All Japonica | 244 | 99.20% | 0.00% | 0.82% | 0.00% | NA |
| Aus | 7 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 95.70% | 2.50% | 1.83% | 0.00% | NA |
| Indica II | 215 | 94.40% | 3.80% | 1.86% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 95.30% | 2.20% | 2.63% | 0.00% | NA |
| Temperate Japonica | 189 | 98.90% | 0.00% | 1.06% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 94.80% | 1.80% | 3.46% | 0.00% | NA |