TGAAAACTTCCTTTTGCTGTAGCCTTCTGTTGTGTGCACCTTAATCCCTGAACTACAATGACACAACACCAAGATCAAGTGGAAAATACTAACCTCATCT[GTA/GCG]
AAAAAACCAGATATGCGAGCAATAAGTTCATCCCATGCTTCTTCAGGAGTACTGGGAGCATTTGCAGTGGGCTGAATACCAAGCTACAACGAAGACAATA
TATTGTCTTCGTTGTAGCTTGGTATTCAGCCCACTGCAAATGCTCCCAGTACTCCTGAAGAAGCATGGGATGAACTTATTGCTCGCATATCTGGTTTTTT[TAC/CGC]
AGATGAGGTTAGTATTTTCCACTTGATCTTGGTGTTGTGTCATTGTAGTTCAGGGATTAAGGTGCACACAACAGAAGGCTACAGCAAAAGGAAGTTTTCA
| Populations | Population Size | Frequency of GTA(primary allele) | Frequency of GCG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 52.30% | 41.60% | 10.34% | 0.00% | NA |
| All Indica | 492 | 38.20% | 55.50% | 10.16% | 0.00% | NA |
| All Japonica | 244 | 90.20% | 0.00% | 9.84% | 0.00% | NA |
| Aus | 7 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 38.20% | 55.50% | 10.16% | 0.00% | NA |
| Indica II | 215 | 24.60% | 68.40% | 9.30% | 0.00% | NA |
| Indica III | 21 | 22.20% | 66.70% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 29.40% | 63.20% | 10.53% | 0.00% | NA |
| Temperate Japonica | 189 | 91.00% | 0.00% | 8.99% | 0.00% | NA |
| Tropical Japonica | 36 | 80.60% | 0.00% | 19.44% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 37.60% | 55.40% | 11.26% | 0.00% | NA |