Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CCGCTTCTTCGTCGCCGGCACGCAGCCGCCAGGTTCTCTCAATTAACCGCGCGCGTACGGTTAATTTGATCGATCGGGTCAGCCATGGGACTTTTCCAAT[GCTAGCTAGCTA/GCTAGCTAG]
ATAGTGTAGGTGTTCTGGGCCGGATTCTTGATCGAGATAGCAGCCTCTTGATTGAGATGCCCAGATGGGTCATTTTGGATGTAGCTGGATCTTTTTTTCC

Reverse complement sequence

GGAAAAAAAGATCCAGCTACATCCAAAATGACCCATCTGGGCATCTCAATCAAGAGGCTGCTATCTCGATCAAGAATCCGGCCCAGAACACCTACACTAT[TAGCTAGCTAGC/CTAGCTAGC]
ATTGGAAAAGTCCCATGGCTGACCCGATCGATCAAATTAACCGTACGCGCGCGGTTAATTGAGAGAACCTGGCGGCTGCGTGCCGGCGACGAAGAAGCGG

Allele Frequencies:

Populations Population SizeFrequency of GCTAGCTAGCTA(primary allele) Frequency of GCTAGCTAG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.20% 1.00% 0.78% 0.00% NA
All Indica  492 98.40% 0.60% 1.02% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 16.70% 71.40% 14.29% 0.00% NA
Indica I  492 98.40% 0.60% 1.02% 0.00% NA
Indica II  215 98.60% 0.90% 0.47% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 98.40% 0.50% 1.05% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 98.70% 0.40% 0.87% 0.00% NA