Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CCAACCGGAGCATGCGGGGCTACGACGCCATCAATCGGATCAAGGCGAGGCTGGAGACCGTCTGCCCGCTCACCGTCTCCTGCGCCGACATCATCGCCAT[GGCG/GGCA]
GCGAGAGACGCCGTCTACCTGGTACGCGCCTCACGGAACAAATCCATGGCTTCTTTGCAAATCGATATCGCGCTCTGCTTCTGAATGCTCCTTGATTCGC

Reverse complement sequence

GCGAATCAAGGAGCATTCAGAAGCAGAGCGCGATATCGATTTGCAAAGAAGCCATGGATTTGTTCCGTGAGGCGCGTACCAGGTAGACGGCGTCTCTCGC[CGCC/TGCC]
ATGGCGATGATGTCGGCGCAGGAGACGGTGAGCGGGCAGACGGTCTCCAGCCTCGCCTTGATCCGATTGATGGCGTCGTAGCCCCGCATGCTCCGGTTGG

Allele Frequencies:

Populations Population SizeFrequency of GGCG(primary allele) Frequency of GGCA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 97.40% 1.20% 1.42% 0.00% NA
All Indica  492 98.00% 0.60% 1.42% 0.00% NA
All Japonica  244 99.60% 0.00% 0.41% 0.00% NA
Aus  7 57.10% 42.90% 0.00% 0.00% NA
Indica I  492 98.00% 0.60% 1.42% 0.00% NA
Indica II  215 98.60% 0.50% 0.93% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 96.80% 1.10% 2.11% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 97.20% 0.00% 2.78% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 66.70% 25.00% 11.11% 0.00% NA
Intermediate  231 96.10% 1.30% 2.60% 0.00% NA