Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


TTTGTTTTGGAATGAGAAATGATTGAAGTTGCAACTTGACCATGATGTTAGGTTTGTTATATAGGACTTAATTCCATATCTAAAAAAAATAGGATAGGAT[AAA/AAAA]
AAAAAAGAGGCATCTCTAAGTTCAATTTACCTGGAGATAATGGTTCTGTGCCGGAGCAGCGGCGGCTGCGTTGTCGTCGTCTTCCTCGAAGGCCCTGTAC

Reverse complement sequence

GTACAGGGCCTTCGAGGAAGACGACGACAACGCAGCCGCCGCTGCTCCGGCACAGAACCATTATCTCCAGGTAAATTGAACTTAGAGATGCCTCTTTTTT[TTT/TTTT]
ATCCTATCCTATTTTTTTTAGATATGGAATTAAGTCCTATATAACAAACCTAACATCATGGTCAAGTTGCAACTTCAATCATTTCTCATTCCAAAACAAA

Allele Frequencies:

Populations Population SizeFrequency of AAA(primary allele) Frequency of AAAA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 98.60% 0.30% 1.16% 0.00% NA
All Indica  492 98.60% 0.20% 1.22% 0.00% NA
All Japonica  244 98.80% 0.00% 1.23% 0.00% NA
Aus  7 85.70% 14.30% 0.00% 0.00% NA
Indica I  492 98.60% 0.20% 1.22% 0.00% NA
Indica II  215 99.10% 0.50% 0.47% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 97.40% 0.00% 2.63% 0.00% NA
Temperate Japonica  189 98.40% 0.00% 1.59% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 97.80% 0.00% 2.16% 0.00% NA