Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


GTGATCCAGTGACTTACCTGAAAAGCAAGAGAAATAAAGGACAATACTTAGGTCTGACACATAAAATCTTGCAGGTGGGAGAAAATGAGGTGCACATGCA[C/A,T]
GCACGCACGCACAGCACAACACAGCACAGCAGCTAACAAAATTGGGACTTAATTGGCAACAGAAGAAAGGTGGACATGGCCTCCCAGTCCCAGCACTCCA

Reverse complement sequence

TGGAGTGCTGGGACTGGGAGGCCATGTCCACCTTTCTTCTGTTGCCAATTAAGTCCCAATTTTGTTAGCTGCTGTGCTGTGTTGTGCTGTGCGTGCGTGC[G/T,A]
TGCATGTGCACCTCATTTTCTCCCACCTGCAAGATTTTATGTGTCAGACCTAAGTATTGTCCTTTATTTCTCTTGCTTTTCAGGTAAGTCACTGGATCAC

Allele Frequencies:

Populations Population SizeFrequency of C(primary allele) Frequency of T(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 97.50% 1.00% 1.42% 0.00% NA
All Indica  492 97.40% 0.40% 2.24% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 97.40% 0.40% 2.24% 0.00% NA
Indica II  215 98.10% 0.50% 1.40% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 95.30% 0.50% 4.21% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 33.30% 66.70% 0.00% 0.00% NA
Intermediate  231 96.10% 0.40% 3.46% 0.00% NA