GAATCATGGATTAAACTTTTCCCCCTTTTCCTTTCATCAGGATACCAGGCCATAATACTTGCATTGACTAGCTCATTTGGGATGAATACTATAACTCCAA[A/ATGTTTT]
TGTTTTTGTCTCTGTCCTCCAGGCCCTTGCATCTTTTCTTTTCTTTTTTTCCAGTACTTCTAAATTCCAAGAAACACAACCGGCCTCTCCACAATGATCA
TGATCATTGTGGAGAGGCCGGTTGTGTTTCTTGGAATTTAGAAGTACTGGAAAAAAAGAAAAGAAAAGATGCAAGGGCCTGGAGGACAGAGACAAAAACA[T/AAAACAT]
TTGGAGTTATAGTATTCATCCCAAATGAGCTAGTCAATGCAAGTATTATGGCCTGGTATCCTGATGAAAGGAAAAGGGGGAAAAGTTTAATCCATGATTC
| Populations | Population Size | Frequency of A(primary allele) | Frequency of ATGTTTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 78.60% | 17.80% | 4.39% | 0.00% | NA |
| All Indica | 492 | 68.50% | 27.10% | 6.10% | 0.00% | NA |
| All Japonica | 244 | 98.40% | 1.60% | 0.00% | 0.00% | NA |
| Aus | 7 | 40.00% | 42.90% | 28.57% | 0.00% | NA |
| Indica I | 492 | 68.50% | 27.10% | 6.10% | 0.00% | NA |
| Indica II | 215 | 72.10% | 23.60% | 5.58% | 0.00% | NA |
| Indica III | 21 | 66.70% | 30.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 64.20% | 32.20% | 5.26% | 0.00% | NA |
| Temperate Japonica | 189 | 99.50% | 0.50% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 94.40% | 5.60% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 5.30% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 69.30% | 26.90% | 5.19% | 0.00% | NA |