AGCTGGGTCAGCTGACGTCACACAAACTTCAGAAGCAAAACTCTGAAGCCTGATACGCCTGATAGTGATACCCAGAGTGAATTTTACTGTACTTGATCTC[T/TT,TTT,TTTT]
TTTTTTTCACGGAATCAATTGGAAATTTGGAATACTGGTCTTATCTTCCCTGGAATAACGGGGTCAATCAGAGTAACTGCAGAATAACAGGAACTCGATA
TATCGAGTTCCTGTTATTCTGCAGTTACTCTGATTGACCCCGTTATTCCAGGGAAGATAAGACCAGTATTCCAAATTTCCAATTGATTCCGTGAAAAAAA[A/AA,AAA,AAAA]
GAGATCAAGTACAGTAAAATTCACTCTGGGTATCACTATCAGGCGTATCAGGCTTCAGAGTTTTGCTTCTGAAGTTTGTGTGACGTCAGCTGACCCAGCT
| Populations | Population Size | Frequency of TT(primary allele) | Frequency of TTTT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 69.10% | 2.10% | 6.20% | 0.00% | NA |
| All Indica | 492 | 88.60% | 1.30% | 4.47% | 0.00% | NA |
| All Japonica | 244 | 0.00% | 3.20% | 9.43% | 0.00% | NA; TTTT: 42.60% |
| Aus | 7 | 0.00% | 0.00% | 0.00% | 0.00% | NA; TTT: 0.00%; TTT: 100.00% |
| Indica I | 492 | 88.60% | 1.30% | 4.47% | 0.00% | NA |
| Indica II | 215 | 89.80% | 1.00% | 3.72% | 0.00% | NA |
| Indica III | 21 | 85.70% | 0.00% | 0.00% | 0.00% | NA; TTT: 14.30% |
| Indica Intermediate | 190 | 83.20% | 2.30% | 6.84% | 0.00% | NA |
| Temperate Japonica | 189 | 0.00% | 2.90% | 10.05% | 0.00% | NA; TTTT: 49.20% |
| Tropical Japonica | 36 | 66.70% | 0.00% | 8.33% | 0.00% | NA; TTT: 27.30% |
| Japonica Intermediate | 19 | 73.70% | 0.00% | 5.26% | 0.00% | NA; TTT: 11.10% |
| VI/Aromatic | 9 | 0.00% | 0.00% | 11.11% | 0.00% | NA; TTT: 0.00%; TTT: 88.90% |
| Intermediate | 231 | 81.00% | 3.70% | 6.93% | 0.00% | NA |