CAGAATCAATCGATCGATCGATCTTTGCAAAGCGATTTTTACCTGGTGCCAGTGGGCTGCATCCATGCAAGAGGGCTCTCCAACTGCGTCTACCTCGCTG[CCC/CC]
CCCCAACAATTCTTGCTCCTCCGGGCACCTGAGGAGACGAAGCGCAACGAAGACGAAGACGACGAGCGAGCTCCACCTCCTGATGCAGCAGCTGGTGGAT
ATCCACCAGCTGCTGCATCAGGAGGTGGAGCTCGCTCGTCGTCTTCGTCTTCGTTGCGCTTCGTCTCCTCAGGTGCCCGGAGGAGCAAGAATTGTTGGGG[GGG/GG]
CAGCGAGGTAGACGCAGTTGGAGAGCCCTCTTGCATGGATGCAGCCCACTGGCACCAGGTAAAAATCGCTTTGCAAAGATCGATCGATCGATTGATTCTG
| Populations | Population Size | Frequency of CC(primary allele) | Frequency of CCC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 60.50% | 36.90% | 4.13% | 0.00% | NA |
| All Indica | 492 | 92.50% | 4.40% | 3.25% | 0.00% | NA |
| All Japonica | 244 | 1.30% | 94.70% | 4.10% | 0.00% | NA |
| Aus | 7 | 33.30% | 57.10% | 14.29% | 0.00% | NA |
| Indica I | 492 | 92.50% | 4.40% | 3.25% | 0.00% | NA |
| Indica II | 215 | 93.50% | 3.80% | 2.79% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 90.00% | 6.00% | 4.21% | 0.00% | NA |
| Temperate Japonica | 189 | 0.60% | 95.20% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 2.90% | 94.40% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.60% | 89.50% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 77.90% | 17.10% | 6.06% | 0.00% | NA |