TCTTTTGATGCAAGCGGCAAGGAGACAGAAGAAAAGAAGGAGAAAAGCTATGAGAAAAGAAGATGAGGAAAGGGGGGGATTAGAAAGAAGAAAGGCGATG[GTGTGTGTGTGTGTG/GTGTGTGTGTGTGTGTG]
CTGCTTTCAAGGATCAAAAGGGAGAGGGATTAAAGCCACAAAGGGCCTCACCCCCCCCCCCCCCTCAAAGCCTATGGAGGAGGGAGAGAGAAGCGTGTGT
ACACACGCTTCTCTCTCCCTCCTCCATAGGCTTTGAGGGGGGGGGGGGGGTGAGGCCCTTTGTGGCTTTAATCCCTCTCCCTTTTGATCCTTGAAAGCAG[CACACACACACACAC/CACACACACACACACAC]
CATCGCCTTTCTTCTTTCTAATCCCCCCCTTTCCTCATCTTCTTTTCTCATAGCTTTTCTCCTTCTTTTCTTCTGTCTCCTTGCCGCTTGCATCAAAAGA
| Populations | Population Size | Frequency of GTGTGTGTGTGTGTG(primary allele) | Frequency of GTGTGTGTGTGTGTGTG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 94.60% | 0.10% | 5.30% | 0.00% | NA |
| All Indica | 492 | 93.90% | 0.20% | 5.89% | 0.00% | NA |
| All Japonica | 244 | 95.90% | 0.00% | 4.10% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 93.90% | 0.20% | 5.89% | 0.00% | NA |
| Indica II | 215 | 92.10% | 0.00% | 7.91% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 95.30% | 0.50% | 4.21% | 0.00% | NA |
| Temperate Japonica | 189 | 94.70% | 0.00% | 5.29% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 95.20% | 0.50% | 4.33% | 0.00% | NA |