AGATGAAAGAGAAACACACCACCACACAAAACACAACTTTGTTTGTGCTGTTGTAGGGTTGCGCGCAGTAGTAGTACCACAGCTGCTCCTGCTGCTGCTG[CTACT/CTACC]
ACACATCACCGGGGACATGGCTACTCTTTTGATGCAAGCGGCAAGGAGACAGAAGAAAAGAAGGAGAAAAGCTATGAGAAAAGAAGATGAGGAAAGGGGG
CCCCCTTTCCTCATCTTCTTTTCTCATAGCTTTTCTCCTTCTTTTCTTCTGTCTCCTTGCCGCTTGCATCAAAAGAGTAGCCATGTCCCCGGTGATGTGT[AGTAG/GGTAG]
CAGCAGCAGCAGGAGCAGCTGTGGTACTACTACTGCGCGCAACCCTACAACAGCACAAACAAAGTTGTGTTTTGTGTGGTGGTGTGTTTCTCTTTCATCT
| Populations | Population Size | Frequency of CTACT(primary allele) | Frequency of CTACT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 99.00% | 99.00% | 1.03% | 0.00% | NA |
| All Indica | 492 | 98.80% | 98.80% | 1.22% | 0.00% | NA |
| All Japonica | 244 | 99.60% | 99.60% | 0.41% | 0.00% | NA |
| Aus | 7 | 85.70% | 85.70% | 14.29% | 0.00% | NA |
| Indica I | 492 | 98.80% | 98.80% | 1.22% | 0.00% | NA |
| Indica II | 215 | 99.10% | 99.10% | 0.93% | 0.00% | NA |
| Indica III | 21 | 100.00% | 100.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 97.90% | 97.90% | 2.11% | 0.00% | NA |
| Temperate Japonica | 189 | 99.50% | 99.50% | 0.53% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 100.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 100.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 98.30% | 98.30% | 1.73% | 0.00% | NA |