GCAACTAAGAACCAAGCAAAAGGATACAAAGGCAGATTAGAGGGGGGAGGAAAGGTGAAACTGGTAAAGGGGGGAGAGGAAAGGAAAAGGTGATAAGCGA[AAGGAAGGAA/AAGGAAGGAAGGAA]
AGAAAAGATGAAAGAGAAACACACCACCACACAAAACACAACTTTGTTTGTGCTGTTGTAGGGTTGCGCGCAGTAGTAGTACCACAGCTGCTCCTGCTGC
GCAGCAGGAGCAGCTGTGGTACTACTACTGCGCGCAACCCTACAACAGCACAAACAAAGTTGTGTTTTGTGTGGTGGTGTGTTTCTCTTTCATCTTTTCT[TTCCTTCCTT/TTCCTTCCTTCCTT]
TCGCTTATCACCTTTTCCTTTCCTCTCCCCCCTTTACCAGTTTCACCTTTCCTCCCCCCTCTAATCTGCCTTTGTATCCTTTTGCTTGGTTCTTAGTTGC
| Populations | Population Size | Frequency of AAGGAAGGAAGGAA(primary allele) | Frequency of AAGGAAGGAA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 59.60% | 37.20% | 5.17% | 0.00% | NA |
| All Indica | 492 | 90.90% | 4.10% | 5.28% | 0.00% | NA |
| All Japonica | 244 | 1.30% | 94.70% | 4.10% | 0.00% | NA |
| Aus | 7 | 20.00% | 57.10% | 28.57% | 0.00% | NA |
| Indica I | 492 | 90.90% | 4.10% | 5.28% | 0.00% | NA |
| Indica II | 215 | 91.60% | 3.00% | 5.58% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 89.50% | 6.10% | 4.74% | 0.00% | NA |
| Temperate Japonica | 189 | 0.60% | 95.20% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 2.90% | 91.70% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.30% | 94.70% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 78.40% | 17.70% | 4.76% | 0.00% | NA |