GATAGGATCCAGGTGTTTATTGAGTGAGCATGCCTGTTTTCCATTTGCTGGCGCACTGCAAAATCCAAATGCATGGACCTTCAAAGCGGCACCAGACTTC[TTGTTG/TTCTTC,TTCTTG]
TTGTGAAAACCAGTGAACTAGTAAAATCCAACATTGATCATATGACCTGAAGTCATGAACTAATGGTTTCCTAGTCCCTCGATGCTACACCCAAATAATC
GATTATTTGGGTGTAGCATCGAGGGACTAGGAAACCATTAGTTCATGACTTCAGGTCATATGATCAATGTTGGATTTTACTAGTTCACTGGTTTTCACAA[CAACAA/GAAGAA,CAAGAA]
GAAGTCTGGTGCCGCTTTGAAGGTCCATGCATTTGGATTTTGCAGTGCGCCAGCAAATGGAAAACAGGCATGCTCACTCAATAAACACCTGGATCCTATC
| Populations | Population Size | Frequency of TTCTTG(primary allele) | Frequency of TTCTTC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 47.70% | 4.80% | 8.53% | 0.00% | NA |
| All Indica | 492 | 73.40% | 7.40% | 9.35% | 0.00% | NA |
| All Japonica | 244 | 0.40% | 0.00% | 6.56% | 0.00% | NA; TTCTTG: 93.00% |
| Aus | 7 | 0.00% | 0.00% | 14.29% | 0.00% | NA; TTGTTG: 0.00%; TTGTTG: 85.70% |
| Indica I | 492 | 73.40% | 7.40% | 9.35% | 0.00% | NA |
| Indica II | 215 | 81.40% | 6.00% | 6.98% | 0.00% | NA |
| Indica III | 21 | 42.90% | 25.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 62.60% | 12.40% | 10.53% | 0.00% | NA |
| Temperate Japonica | 189 | 0.60% | 0.00% | 6.35% | 0.00% | NA; TTCTTG: 93.10% |
| Tropical Japonica | 36 | 0.00% | 0.00% | 5.56% | 0.00% | NA; TTGTTG: 0.00%; TTGTTG: 94.40% |
| Japonica Intermediate | 19 | 0.00% | 0.00% | 10.53% | 0.00% | NA; TTGTTG: 0.00%; TTGTTG: 89.50% |
| VI/Aromatic | 9 | 0.00% | 0.00% | 0.00% | 0.00% | NA; TTGTTG: 0.00%; TTGTTG: 100.00% |
| Intermediate | 231 | 54.50% | 10.70% | 10.82% | 0.00% | NA |