TCGTCAAAGTCACTAGAATTTAAAATGACTTAAAGTTGTCCCATATGAAGGAATATCTCAATTCCTTTTATATGATTCTTATGCCAAAAGGGTGAGATGA[TTTT/TT,TTT]
TTTTACCGAGGAAAAAAATGTGAGATATTATGGATGCAATTGATAGAAAACCGGGGGTAATTACATAACCGTACATGCTTATTCGAATATTGAATATGAC
GTCATATTCAATATTCGAATAAGCATGTACGGTTATGTAATTACCCCCGGTTTTCTATCAATTGCATCCATAATATCTCACATTTTTTTCCTCGGTAAAA[AAAA/AA,AAA]
TCATCTCACCCTTTTGGCATAAGAATCATATAAAAGGAATTGAGATATTCCTTCATATGGGACAACTTTAAGTCATTTTAAATTCTAGTGACTTTGACGA
| Populations | Population Size | Frequency of TTT(primary allele) | Frequency of TT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 59.00% | 1.50% | 4.39% | 0.00% | NA |
| All Indica | 492 | 90.20% | 1.90% | 4.27% | 0.00% | NA |
| All Japonica | 244 | 0.90% | 0.00% | 4.51% | 0.00% | NA; TTT: 94.70% |
| Aus | 7 | 0.00% | 14.30% | 0.00% | 0.00% | NA; TT: 85.70% |
| Indica I | 492 | 90.20% | 1.90% | 4.27% | 0.00% | NA |
| Indica II | 215 | 94.40% | 1.40% | 2.33% | 0.00% | NA |
| Indica III | 21 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 86.30% | 3.40% | 5.79% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 0.00% | 5.29% | 0.00% | NA; TTT: 93.70% |
| Tropical Japonica | 36 | 0.00% | 0.00% | 2.78% | 0.00% | NA; TTTT: 0.00%; TTTT: 97.20% |
| Japonica Intermediate | 19 | 0.00% | 0.00% | 0.00% | 0.00% | NA; TTTT: 0.00%; TTTT: 100.00% |
| VI/Aromatic | 9 | 0.00% | 0.00% | 0.00% | 0.00% | NA; TTTT: 0.00%; TTTT: 100.00% |
| Intermediate | 231 | 75.80% | 3.20% | 5.63% | 0.00% | NA |