Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


AATCAAATTGTTTCCACAGCTGCATTACCTGAAACTGAAACCTCCCAAATTTCAGTTCAAAACGAGCTGCTCGAGATGGCATCGATGGCGATGAACAATG[GCAG/GCAGCAG]
CAGCAGCAGCACCATCGCCCTAGTCTATGACGATGGGGGTGGCCGAGGTGTAGCCGCCGGCGCGGCCCCGGATCCTCGCCGGGATCTCCGCGCGGAGGAC

Reverse complement sequence

GTCCTCCGCGCGGAGATCCCGGCGAGGATCCGGGGCCGCGCCGGCGGCTACACCTCGGCCACCCCCATCGTCATAGACTAGGGCGATGGTGCTGCTGCTG[CTGC/CTGCTGC]
CATTGTTCATCGCCATCGATGCCATCTCGAGCAGCTCGTTTTGAACTGAAATTTGGGAGGTTTCAGTTTCAGGTAATGCAGCTGTGGAAACAATTTGATT

Allele Frequencies:

Populations Population SizeFrequency of GCAG(primary allele) Frequency of GCAGCAG(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 93.30% 3.70% 3.10% 0.00% NA
All Indica  492 96.30% 0.00% 3.66% 0.00% NA
All Japonica  244 86.50% 11.70% 2.05% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 96.30% 0.00% 3.66% 0.00% NA
Indica II  215 95.30% 0.00% 4.65% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 96.80% 0.00% 3.16% 0.00% NA
Temperate Japonica  189 83.60% 14.60% 2.12% 0.00% NA
Tropical Japonica  36 94.40% 2.90% 2.78% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 97.00% 0.00% 3.03% 0.00% NA