Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


AACATTTTCGATCTACTTGGTGAAAGAGCATCCAATTGGATTTAAAATCTGCATGATTGAAGCCTAAAATATCATCCAAATCCCATATAGACTTCCCTTT[AA/A]
AAAAAATTCAAAAATAAACTACCCCTTAAACCATACGGGCTAACGACCTATCGAGATTCGAGCACCCCCACGGAGCTCAGAAGCACCAGCCAAGCACCAT

Reverse complement sequence

ATGGTGCTTGGCTGGTGCTTCTGAGCTCCGTGGGGGTGCTCGAATCTCGATAGGTCGTTAGCCCGTATGGTTTAAGGGGTAGTTTATTTTTGAATTTTTT[TT/T]
AAAGGGAAGTCTATATGGGATTTGGATGATATTTTAGGCTTCAATCATGCAGATTTTAAATCCAATTGGATGCTCTTTCACCAAGTAGATCGAAAATGTT

Allele Frequencies:

Populations Population SizeFrequency of AA(primary allele) Frequency of A(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 87.00% 7.40% 6.07% 0.00% NA
All Indica  492 80.50% 11.60% 8.94% 0.00% NA
All Japonica  244 99.20% 0.40% 0.41% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 80.50% 11.60% 8.94% 0.00% NA
Indica II  215 79.10% 11.50% 10.70% 0.00% NA
Indica III  21 61.90% 27.80% 14.29% 0.00% NA
Indica Intermediate  190 77.90% 14.50% 8.95% 0.00% NA
Temperate Japonica  189 99.50% 0.00% 0.53% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 94.70% 5.30% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 80.10% 12.70% 8.23% 0.00% NA