AGATCTACCACAATTCCTAAGCTACTACATCTGCCATCCGAATGTGCATATCATCCACTTCCTTTCAATTTGCATTCACCATTCCAACCAATCGACACAA[CAGCAGCAGCA/CAGCAGCAGCAGCA]
AAGTTATGAGAATTGAGAGACTCTATACACACAGCTCCCCATTCACATGGCTCAAAATCAGAACAAATGGTGGTTAAGAAAAAAGCAGGAGGTTAGTCGA
TCGACTAACCTCCTGCTTTTTTCTTAACCACCATTTGTTCTGATTTTGAGCCATGTGAATGGGGAGCTGTGTGTATAGAGTCTCTCAATTCTCATAACTT[TGCTGCTGCTG/TGCTGCTGCTGCTG]
TTGTGTCGATTGGTTGGAATGGTGAATGCAAATTGAAAGGAAGTGGATGATATGCACATTCGGATGGCAGATGTAGTAGCTTAGGAATTGTGGTAGATCT
| Populations | Population Size | Frequency of CAGCAGCAGCA(primary allele) | Frequency of CAGCAGCAGCAGCA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 58.70% | 37.70% | 5.81% | 0.00% | NA |
| All Indica | 492 | 43.90% | 52.00% | 7.32% | 0.00% | NA |
| All Japonica | 244 | 93.90% | 2.60% | 3.69% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 43.90% | 52.00% | 7.32% | 0.00% | NA |
| Indica II | 215 | 35.80% | 60.00% | 6.51% | 0.00% | NA |
| Indica III | 21 | 38.10% | 61.90% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 37.70% | 57.40% | 7.89% | 0.00% | NA |
| Temperate Japonica | 189 | 95.20% | 1.60% | 3.17% | 0.00% | NA |
| Tropical Japonica | 36 | 83.30% | 9.10% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 44.00% | 52.40% | 6.49% | 0.00% | NA |