Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


CTAAAATAAAAGTAAATTGCAGTTTTTCACACTAATTGTTTGCTGCTTGATATTTCCCCTTTTAACAGGTGACCTAAGTACAGTTAATCTGCAATTAAAT[T/C]
TACTCTACTTAACCAGCAAAACAACCAAGAACTGAAGAATTGGAAGGCACCAGAAGGCAGAATTGCTGGGCAAATTCCTCGATAGAGGAATAGTTCTTAC

Reverse complement sequence

GTAAGAACTATTCCTCTATCGAGGAATTTGCCCAGCAATTCTGCCTTCTGGTGCCTTCCAATTCTTCAGTTCTTGGTTGTTTTGCTGGTTAAGTAGAGTA[A/G]
ATTTAATTGCAGATTAACTGTACTTAGGTCACCTGTTAAAAGGGGAAATATCAAGCAGCAAACAATTAGTGTGAAAAACTGCAATTTACTTTTATTTTAG

Allele Frequencies:

Populations Population SizeFrequency of T(primary allele) Frequency of C(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 97.00% 2.20% 0.78% 0.00% NA
All Indica  492 95.50% 3.30% 1.22% 0.00% NA
All Japonica  244 100.00% 0.00% 0.00% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 95.50% 3.30% 1.22% 0.00% NA
Indica II  215 94.40% 5.10% 0.47% 0.00% NA
Indica III  21 81.00% 19.00% 0.00% 0.00% NA
Indica Intermediate  190 94.70% 2.70% 2.63% 0.00% NA
Temperate Japonica  189 100.00% 0.00% 0.00% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 100.00% 0.00% 0.00% 0.00% NA
Intermediate  231 95.20% 2.70% 2.16% 0.00% NA