CCGGTTCTCCTCATCTGTGACAGATCACAACTACGTACAATTTGATAGTGTGGAGTACAATATCATCTGCAATACTTTACATCACCAAATCGTCTTAATA[T/TT]
TTTTTTTCAAGCTAAGTTCAGCAGTTCTTTCGAGATTACAGGCCTCCTTTTGAACGAAGAAATTTTGCGAAAATTCTACAAAAATTGAACTAATCCATGT
ACATGGATTAGTTCAATTTTTGTAGAATTTTCGCAAAATTTCTTCGTTCAAAAGGAGGCCTGTAATCTCGAAAGAACTGCTGAACTTAGCTTGAAAAAAA[A/AA]
TATTAAGACGATTTGGTGATGTAAAGTATTGCAGATGATATTGTACTCCACACTATCAAATTGTACGTAGTTGTGATCTGTCACAGATGAGGAGAACCGG
| Populations | Population Size | Frequency of TT(primary allele) | Frequency of T(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 63.30% | 34.10% | 4.01% | 0.00% | NA |
| All Indica | 492 | 95.10% | 1.10% | 3.86% | 0.00% | NA |
| All Japonica | 244 | 1.30% | 94.70% | 4.10% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 95.10% | 1.10% | 3.86% | 0.00% | NA |
| Indica II | 215 | 95.30% | 1.90% | 2.79% | 0.00% | NA |
| Indica III | 21 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 92.60% | 0.60% | 6.84% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 94.70% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 2.90% | 91.70% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 0.00% | 100.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 22.20% | 77.80% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 80.50% | 13.90% | 6.49% | 0.00% | NA |