CAATCGTAAGTAAATACACTAGTATACTTTACATGGTATATAGTAGTATATTTCTATGGCTGTACTTGAAGCTTGAAAAAAGTGGAATCTCACAAGCAGC[TCGATCGATC/TCGATCGATCGATC]
AGTACACCGTGAAGATGAGATGAAGCCTACATAGCAGCGAGCTGCCTAATGTTCACGGGGAAGACGAGCGGCGGCGAGCCGTCGAACGCGACGGCGGTGA
TCACCGCCGTCGCGTTCGACGGCTCGCCGCCGCTCGTCTTCCCCGTGAACATTAGGCAGCTCGCTGCTATGTAGGCTTCATCTCATCTTCACGGTGTACT[GATCGATCGA/GATCGATCGATCGA]
GCTGCTTGTGAGATTCCACTTTTTTCAAGCTTCAAGTACAGCCATAGAAATATACTACTATATACCATGTAAAGTATACTAGTGTATTTACTTACGATTG
| Populations | Population Size | Frequency of TCGATCGATCGATC(primary allele) | Frequency of TCGATCGATC(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 48.70% | 41.00% | 17.44% | 0.00% | NA |
| All Indica | 492 | 73.80% | 3.20% | 23.78% | 0.00% | NA |
| All Japonica | 244 | 0.90% | 94.70% | 4.51% | 0.00% | NA |
| Aus | 7 | 57.10% | 0.00% | 42.86% | 0.00% | NA |
| Indica I | 492 | 73.80% | 3.20% | 23.78% | 0.00% | NA |
| Indica II | 215 | 78.60% | 1.20% | 20.47% | 0.00% | NA |
| Indica III | 21 | 85.70% | 0.00% | 14.29% | 0.00% | NA |
| Indica Intermediate | 190 | 71.10% | 6.20% | 24.21% | 0.00% | NA |
| Temperate Japonica | 189 | 0.00% | 95.80% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 2.90% | 91.70% | 5.56% | 0.00% | NA |
| Japonica Intermediate | 19 | 5.60% | 89.50% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 11.10% | 88.90% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 61.90% | 20.60% | 22.08% | 0.00% | NA |