CGGACGCGTCGGAGGGTCGGGCCGTTGACGCGGGGCTCGCCCGCTTGCTCTTCTTCTTCCTCCTCCTCCGCAGCTTCAGCTTGTGCAACCATGACCAGCG[GGAGGAGGAGGAGGAG/GGAGGAGGAGGAGGAGGAG]
GCTGGCATCGCGTGGCGTGCGTGGGCTGGGGGCGCGGGAGACAAGAGACACACCCACCACGCTCTGGTGCGCGGCAGAGACACAGACCAGAGTGTTTGTG
CACAAACACTCTGGTCTGTGTCTCTGCCGCGCACCAGAGCGTGGTGGGTGTGTCTCTTGTCTCCCGCGCCCCCAGCCCACGCACGCCACGCGATGCCAGC[CTCCTCCTCCTCCTCC/CTCCTCCTCCTCCTCCTCC]
CGCTGGTCATGGTTGCACAAGCTGAAGCTGCGGAGGAGGAGGAAGAAGAAGAGCAAGCGGGCGAGCCCCGCGTCAACGGCCCGACCCTCCGACGCGTCCG
| Populations | Population Size | Frequency of GGAGGAGGAGGAGGAGGAG(primary allele) | Frequency of GGAGGAGGAGGAGGAG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 57.20% | 36.70% | 9.56% | 0.00% | NA |
| All Indica | 492 | 86.00% | 4.30% | 10.16% | 0.00% | NA |
| All Japonica | 244 | 2.20% | 89.30% | 8.61% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 86.00% | 4.30% | 10.16% | 0.00% | NA |
| Indica II | 215 | 90.20% | 1.50% | 8.37% | 0.00% | NA |
| Indica III | 21 | 90.50% | 5.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 81.10% | 7.20% | 12.63% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 91.00% | 7.94% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 88.90% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 17.60% | 73.70% | 10.53% | 0.00% | NA |
| VI/Aromatic | 9 | 11.10% | 88.90% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 71.40% | 18.30% | 12.55% | 0.00% | NA |