AGAGATAATTTCAGCCTGTATTCTCCTTCCACATACAACATAACATGTACAGGGTGACTTCTATTTTGGGCGCTACATTTACATTTCATACTATCACCCC[A/C]
CCATCGTTTAGGTCTCTTACACAAAAGTATTTCGCATTTCTATTGTATAATGAGACTACACACTGCTAAACATCAGACATATTATACACTGCTGAACATC
GATGTTCAGCAGTGTATAATATGTCTGATGTTTAGCAGTGTGTAGTCTCATTATACAATAGAAATGCGAAATACTTTTGTGTAAGAGACCTAAACGATGG[T/G]
GGGGTGATAGTATGAAATGTAAATGTAGCGCCCAAAATAGAAGTCACCCTGTACATGTTATGTTGTATGTGGAAGGAGAATACAGGCTGAAATTATCTCT
| Populations | Population Size | Frequency of A(primary allele) | Frequency of C(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 98.20% | 1.00% | 0.78% | 0.00% | NA |
| All Indica | 492 | 98.60% | 0.60% | 0.81% | 0.00% | NA |
| All Japonica | 244 | 99.60% | 0.00% | 0.41% | 0.00% | NA |
| Aus | 7 | 42.90% | 0.00% | 14.29% | 0.00% | NA |
| Indica I | 492 | 98.60% | 0.60% | 0.81% | 0.00% | NA |
| Indica II | 215 | 99.10% | 0.50% | 0.47% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 97.40% | 1.10% | 1.58% | 0.00% | NA |
| Temperate Japonica | 189 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 77.80% | 22.20% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 97.80% | 0.90% | 1.30% | 0.00% | NA |