ATTTACGACCCGGTTCTGCCATTGATGCTTGCAGCATCCAAATGCCGGTGCAAAAACCACGGAGAAATTAAAAGAGATGATGAACACGTACGAGGCAGTC[GAGGAGGAG/GAGGAG]
ATCAGCAACGCGATAGTGTACAAGATGACAGGACAGGAGTGGAGAGGTGTGGGGCGTATTGGGCGGAGTCCGGGTGCGCTTTTAAAGGGGCAGCGAGTTA
TAACTCGCTGCCCCTTTAAAAGCGCACCCGGACTCCGCCCAATACGCCCCACACCTCTCCACTCCTGTCCTGTCATCTTGTACACTATCGCGTTGCTGAT[CTCCTCCTC/CTCCTC]
GACTGCCTCGTACGTGTTCATCATCTCTTTTAATTTCTCCGTGGTTTTTGCACCGGCATTTGGATGCTGCAAGCATCAATGGCAGAACCGGGTCGTAAAT
| Populations | Population Size | Frequency of GAGGAGGAG(primary allele) | Frequency of GAGGAG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 88.20% | 6.40% | 5.68% | 0.00% | NA |
| All Indica | 492 | 82.70% | 10.40% | 7.72% | 0.00% | NA |
| All Japonica | 244 | 98.00% | 0.00% | 2.05% | 0.00% | NA |
| Aus | 7 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Indica I | 492 | 82.70% | 10.40% | 7.72% | 0.00% | NA |
| Indica II | 215 | 83.30% | 9.60% | 7.91% | 0.00% | NA |
| Indica III | 21 | 71.40% | 25.00% | 4.76% | 0.00% | NA |
| Indica Intermediate | 190 | 77.90% | 15.40% | 7.89% | 0.00% | NA |
| Temperate Japonica | 189 | 97.40% | 0.00% | 2.65% | 0.00% | NA |
| Tropical Japonica | 36 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Japonica Intermediate | 19 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 100.00% | 0.00% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 81.40% | 12.60% | 6.93% | 0.00% | NA |