GCCTTCGTATTTCGTATATAGCTCATCATCTCTCTTAAATTAGTCAGTGCAGTGTGAGGGGGAACAGTTTAAGAAAAAAGAACGAAGCAGCAACGTACCC[AA/AAA]
AAAAAATATTCTTTCTAGGTTGATGGTTTTTTCTTGCTTCGATTTGCTTTGCCTTTTTCTCTTGTGCTTAATTATAATTAAGTTTTCTTAGCTGCTCGAT
ATCGAGCAGCTAAGAAAACTTAATTATAATTAAGCACAAGAGAAAAAGGCAAAGCAAATCGAAGCAAGAAAAAACCATCAACCTAGAAAGAATATTTTTT[TT/TTT]
GGGTACGTTGCTGCTTCGTTCTTTTTTCTTAAACTGTTCCCCCTCACACTGCACTGACTAATTTAAGAGAGATGATGAGCTATATACGAAATACGAAGGC
| Populations | Population Size | Frequency of AAA(primary allele) | Frequency of AA(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 61.10% | 35.80% | 4.78% | 0.00% | NA |
| All Indica | 492 | 91.70% | 3.60% | 4.88% | 0.00% | NA |
| All Japonica | 244 | 1.70% | 93.90% | 4.51% | 0.00% | NA |
| Aus | 7 | 33.30% | 57.10% | 14.29% | 0.00% | NA |
| Indica I | 492 | 91.70% | 3.60% | 4.88% | 0.00% | NA |
| Indica II | 215 | 93.00% | 3.40% | 3.72% | 0.00% | NA |
| Indica III | 21 | 90.50% | 0.00% | 9.52% | 0.00% | NA |
| Indica Intermediate | 190 | 90.00% | 3.40% | 6.84% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 94.70% | 4.23% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 91.70% | 8.33% | 0.00% | NA |
| Japonica Intermediate | 19 | 10.50% | 89.50% | 0.00% | 0.00% | NA |
| VI/Aromatic | 9 | 66.70% | 33.30% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 79.20% | 15.70% | 6.06% | 0.00% | NA |