Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


ACGTATCGATGCAGGAGACGTGGAAGGCGTGGCCGCAGTGCGGCAGCAAGCGTAGCTCCTCCCCCCCGGCGAACTCAGCCAGGCAGATGGCGCACTCCGC[CTGCTGC/CTGC]
TGCTGCTGCTTGAGTGCGAAGGACACGGTGGGGAGCGCGTCGATGGCTTTCTTCTTCAGGCCTTTGGGTGCAGGGGATGTAGCAGCCGGTGTAGTAGTAG

Reverse complement sequence

CTACTACTACACCGGCTGCTACATCCCCTGCACCCAAAGGCCTGAAGAAGAAAGCCATCGACGCGCTCCCCACCGTGTCCTTCGCACTCAAGCAGCAGCA[GCAGCAG/GCAG]
GCGGAGTGCGCCATCTGCCTGGCTGAGTTCGCCGGGGGGGAGGAGCTACGCTTGCTGCCGCACTGCGGCCACGCCTTCCACGTCTCCTGCATCGATACGT

Allele Frequencies:

Populations Population SizeFrequency of CTGC(primary allele) Frequency of CTGCTGC(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 85.30% 12.80% 2.20% 0.00% NA
All Indica  492 98.80% 0.40% 0.81% 0.00% NA
All Japonica  244 58.20% 38.80% 4.92% 0.00% NA
Aus  7 100.00% 0.00% 0.00% 0.00% NA
Indica I  492 98.80% 0.40% 0.81% 0.00% NA
Indica II  215 99.10% 0.50% 0.47% 0.00% NA
Indica III  21 100.00% 0.00% 0.00% 0.00% NA
Indica Intermediate  190 97.90% 0.50% 1.58% 0.00% NA
Temperate Japonica  189 48.10% 49.20% 5.29% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 78.90% 11.80% 10.53% 0.00% NA
VI/Aromatic  9 88.90% 11.10% 0.00% 0.00% NA
Intermediate  231 94.40% 3.10% 2.60% 0.00% NA