Search for Variation information by Variation ID:

Please input a variation ID (e.g., vg0722097923 , STR0500036000 ).

Flanking Sequence (100 bp) in Reference Genome:


ACTAAACTATAAAAAACTAGCTAATTACGCTTTTAAGCGATTTGGTATAATAATTGGTTGTAGCTTGTTGAATAAAGTCTGGAAATATATTCCATTATCT[AA/AAA]
AAAAACTAGCTAATTAAATTAATCACCGTGAAAAAGCAGCTAAAGATCTTAGATCCTAGGTGTGAGATCTACATGGTACATCTTGGAAGGCTTGAGCCCA

Reverse complement sequence

TGGGCTCAAGCCTTCCAAGATGTACCATGTAGATCTCACACCTAGGATCTAAGATCTTTAGCTGCTTTTTCACGGTGATTAATTTAATTAGCTAGTTTTT[TT/TTT]
AGATAATGGAATATATTTCCAGACTTTATTCAACAAGCTACAACCAATTATTATACCAAATCGCTTAAAAGCGTAATTAGCTAGTTTTTTATAGTTTAGT

Allele Frequencies:

Populations Population SizeFrequency of AA(primary allele) Frequency of AAA(secondary allele) Frequency of N Frequency of DEL Frequency of others Allele
All  774 93.00% 4.90% 2.20% 0.00% NA
All Indica  492 91.50% 5.90% 2.85% 0.00% NA
All Japonica  244 99.20% 0.00% 0.82% 0.00% NA
Aus  7 0.00% 100.00% 0.00% 0.00% NA
Indica I  492 91.50% 5.90% 2.85% 0.00% NA
Indica II  215 93.00% 3.80% 3.26% 0.00% NA
Indica III  21 95.20% 4.80% 0.00% 0.00% NA
Indica Intermediate  190 88.90% 8.60% 2.63% 0.00% NA
Temperate Japonica  189 98.90% 0.00% 1.06% 0.00% NA
Tropical Japonica  36 100.00% 0.00% 0.00% 0.00% NA
Japonica Intermediate  19 100.00% 0.00% 0.00% 0.00% NA
VI/Aromatic  9 88.90% 11.10% 0.00% 0.00% NA
Intermediate  231 90.00% 7.60% 2.60% 0.00% NA