ACGGGTCCATGCTGCCGCACGGGATGGTGGCGCCGTAGTACGCGTCCTCCCGCGGCATCGCGCCCAGGGAGGCCAGCAGCCGCGGCAGCCGGAGGAAGAT[GTCGT/GTCAT]
CGTCGGCCTTCATCACGTAGTCGTAGGGGTCGTCGGCGTACAGCCGCGCCGCCGCGGAGAAGAAGGCGTACGTCTTGCCGCCGTTGAGGTTCTCCTCGCA
TGCGAGGAGAACCTCAACGGCGGCAAGACGTACGCCTTCTTCTCCGCGGCGGCGCGGCTGTACGCCGACGACCCCTACGACTACGTGATGAAGGCCGACG[ACGAC/ATGAC]
ATCTTCCTCCGGCTGCCGCGGCTGCTGGCCTCCCTGGGCGCGATGCCGCGGGAGGACGCGTACTACGGCGCCACCATCCCGTGCGGCAGCATGGACCCGT
| Populations | Population Size | Frequency of GTCGT(primary allele) | Frequency of GTCAT(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 96.00% | 1.50% | 2.58% | 0.00% | NA |
| All Indica | 492 | 96.50% | 0.60% | 2.85% | 0.00% | NA |
| All Japonica | 244 | 97.50% | 0.00% | 2.46% | 0.00% | NA |
| Aus | 7 | 14.30% | 85.70% | 0.00% | 0.00% | NA |
| Indica I | 492 | 96.50% | 0.60% | 2.85% | 0.00% | NA |
| Indica II | 215 | 96.70% | 0.50% | 2.79% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 96.30% | 1.10% | 2.63% | 0.00% | NA |
| Temperate Japonica | 189 | 97.90% | 0.00% | 2.12% | 0.00% | NA |
| Tropical Japonica | 36 | 97.20% | 0.00% | 2.78% | 0.00% | NA |
| Japonica Intermediate | 19 | 94.70% | 0.00% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 88.90% | 11.10% | 0.00% | 0.00% | NA |
| Intermediate | 231 | 96.10% | 1.30% | 2.60% | 0.00% | NA |